STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC84176.1Cephalosporin hydroxylase. (246 aa)    
Predicted Functional Partners:
SDC84128.1
ATP-binding cassette, subfamily B, MsbA.
 
     0.800
SDC84196.1
Protein involved in gliding motility EpsB.
       0.788
SDC84152.1
Hypothetical protein.
       0.777
SDC84103.1
Hypothetical protein.
       0.773
SDC84224.1
Protein involved in gliding motility EpsA.
       0.773
SDC84242.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.595
SDC84033.1
Hypothetical protein.
 
     0.508
SDC84261.1
Capsule assembly protein Wzi.
 
     0.495
SDC84084.1
Glycosyl transferases group 1.
  
    0.479
SDC84013.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.467
Your Current Organism:
Algoriphagus faecimaris
NCBI taxonomy Id: 686796
Other names: A. faecimaris, Algoriphagus faecimaris Li et al. 2011, Algoriphagus sp. LYX05, DSM 23095, JCM 16561, LMG 25474, LMG:25474, strain LYX05
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