STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaACysteine desulfhydrase; Tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; also has xysteine desulfhydrase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
KIA80894.1
Tryptophan synthase alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.840
KIA80893.1
Tryptophan synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.835
KIA81011.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.696
KIA80563.1
Catalyzes the degradation of histidine to urocanate and ammmonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.529
KIA81250.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.489
KIA81512.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.417
KIA80712.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.417
KIA80667.1
Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.407
KIA80566.1
Catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.407
Your Current Organism:
Chromobacterium piscinae
NCBI taxonomy Id: 686831
Other names: C. piscinae, CCM 3329, Chromobacterium piscinae Kampfer et al. 2009, LMG 3947, LMG:3947
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