STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIA80954.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
rnhB
RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.667
KIA79586.1
Phosphopantetheine adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.596
KIA80955.1
Chitin deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.582
KIA80925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
KIA81033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.474
KIA80216.1
Dihydropteridine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.462
KIA79844.1
Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.446
KIA80922.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KIA80923.1
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
KIA80924.1
Formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
Your Current Organism:
Chromobacterium piscinae
NCBI taxonomy Id: 686831
Other names: C. piscinae, CCM 3329, Chromobacterium piscinae Kampfer et al. 2009, LMG 3947, LMG:3947
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.