A0A5C3LG94 protein (Crucibulum laeve) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3LG94

ABC transporter type 1, transmembrane domain-containing protein. (627 aa)

Predicted Functional Partners:

A0A5C3LR81

0.899

A0A5C3LZT1

0.897

A0A5C3LNG1

0.881

A0A5C3M3J3

0.666

A0A5C3LWL5

0.636

A0A5C3LWB6

0.589

A0A5C3M0X7

0.584

A0A5C3LI96

0.568

A0A5C3LM06

0.548

A0A5C3LV01

0.543

Your Current Organism:

Crucibulum laeve

NCBI taxonomy Id: 68775
Other names: C. laeve

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3LG94	A0A5C3LI96	ABC transporter type 1, transmembrane domain-containing protein.	Polysaccharide biosynthesis-domain-containing protein.	0.568
A0A5C3LG94	A0A5C3LM06	ABC transporter type 1, transmembrane domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.548
A0A5C3LG94	A0A5C3LNG1	ABC transporter type 1, transmembrane domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.881
A0A5C3LG94	A0A5C3LR81	ABC transporter type 1, transmembrane domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.899
A0A5C3LG94	A0A5C3LV01	ABC transporter type 1, transmembrane domain-containing protein.	Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.543
A0A5C3LG94	A0A5C3LWB6	ABC transporter type 1, transmembrane domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.589
A0A5C3LG94	A0A5C3LWL5	ABC transporter type 1, transmembrane domain-containing protein.	ANTH domain-containing protein.	0.636
A0A5C3LG94	A0A5C3LZT1	ABC transporter type 1, transmembrane domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.897
A0A5C3LG94	A0A5C3M0X7	ABC transporter type 1, transmembrane domain-containing protein.	Metalloenzyme, LuxS/M16 peptidase-like protein; Belongs to the peptidase M16 family.	0.584
A0A5C3LG94	A0A5C3M3J3	ABC transporter type 1, transmembrane domain-containing protein.	Acetyl CoA carboxylase.	0.666
A0A5C3LI96	A0A5C3LG94	Polysaccharide biosynthesis-domain-containing protein.	ABC transporter type 1, transmembrane domain-containing protein.	0.568
A0A5C3LM06	A0A5C3LG94	P-loop containing nucleoside triphosphate hydrolase protein.	ABC transporter type 1, transmembrane domain-containing protein.	0.548
A0A5C3LM06	A0A5C3LV01	P-loop containing nucleoside triphosphate hydrolase protein.	Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.543
A0A5C3LM06	A0A5C3LWB6	P-loop containing nucleoside triphosphate hydrolase protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.589
A0A5C3LM06	A0A5C3LWL5	P-loop containing nucleoside triphosphate hydrolase protein.	ANTH domain-containing protein.	0.636
A0A5C3LM06	A0A5C3M0X7	P-loop containing nucleoside triphosphate hydrolase protein.	Metalloenzyme, LuxS/M16 peptidase-like protein; Belongs to the peptidase M16 family.	0.584
A0A5C3LM06	A0A5C3M3J3	P-loop containing nucleoside triphosphate hydrolase protein.	Acetyl CoA carboxylase.	0.666
A0A5C3LNG1	A0A5C3LG94	P-loop containing nucleoside triphosphate hydrolase protein.	ABC transporter type 1, transmembrane domain-containing protein.	0.881
A0A5C3LNG1	A0A5C3LV01	P-loop containing nucleoside triphosphate hydrolase protein.	Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.543
A0A5C3LNG1	A0A5C3LWB6	P-loop containing nucleoside triphosphate hydrolase protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.589