A0A5C3LM89 protein (Crucibulum laeve) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3LM89

NADP-dependent oxidoreductase domain-containing protein. (347 aa)

Predicted Functional Partners:

A0A5C3LK00

0.714

A0A5C3M1G9

0.667

A0A5C3MEJ9

0.667

A0A5C3MN11

0.666

A0A5C3MBQ0

0.664

A0A5C3M1H5

0.646

A0A5C3M218

0.643

A0A5C3LR04

0.565

A0A5C3LZL2

0.565

A0A5C3M301

0.565

Your Current Organism:

Crucibulum laeve

NCBI taxonomy Id: 68775
Other names: C. laeve

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3LK00	A0A5C3LM89	Ion_trans domain-containing protein.	NADP-dependent oxidoreductase domain-containing protein.	0.714
A0A5C3LM89	A0A5C3LK00	NADP-dependent oxidoreductase domain-containing protein.	Ion_trans domain-containing protein.	0.714
A0A5C3LM89	A0A5C3LR04	NADP-dependent oxidoreductase domain-containing protein.	Uncharacterized protein.	0.565
A0A5C3LM89	A0A5C3LZL2	NADP-dependent oxidoreductase domain-containing protein.	Uncharacterized protein.	0.565
A0A5C3LM89	A0A5C3M1G9	NADP-dependent oxidoreductase domain-containing protein.	Uncharacterized protein.	0.667
A0A5C3LM89	A0A5C3M1H5	NADP-dependent oxidoreductase domain-containing protein.	WD40-repeat-containing domain protein; Belongs to the WD repeat SEC13 family.	0.646
A0A5C3LM89	A0A5C3M218	NADP-dependent oxidoreductase domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.643
A0A5C3LM89	A0A5C3M301	NADP-dependent oxidoreductase domain-containing protein.	Protein transporter SEC13; Belongs to the WD repeat SEC13 family.	0.565
A0A5C3LM89	A0A5C3MBQ0	NADP-dependent oxidoreductase domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.664
A0A5C3LM89	A0A5C3MEJ9	NADP-dependent oxidoreductase domain-containing protein.	Phophatidylserine decarboxylase-domain-containing protein.	0.667
A0A5C3LM89	A0A5C3MN11	NADP-dependent oxidoreductase domain-containing protein.	Uncharacterized protein.	0.666
A0A5C3LR04	A0A5C3LM89	Uncharacterized protein.	NADP-dependent oxidoreductase domain-containing protein.	0.565
A0A5C3LR04	A0A5C3M1H5	Uncharacterized protein.	WD40-repeat-containing domain protein; Belongs to the WD repeat SEC13 family.	0.946
A0A5C3LR04	A0A5C3M218	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.946
A0A5C3LR04	A0A5C3M301	Uncharacterized protein.	Protein transporter SEC13; Belongs to the WD repeat SEC13 family.	0.408
A0A5C3LR04	A0A5C3MBQ0	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.947
A0A5C3LR04	A0A5C3MN11	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A5C3LZL2	A0A5C3LM89	Uncharacterized protein.	NADP-dependent oxidoreductase domain-containing protein.	0.565
A0A5C3LZL2	A0A5C3M1H5	Uncharacterized protein.	WD40-repeat-containing domain protein; Belongs to the WD repeat SEC13 family.	0.946
A0A5C3LZL2	A0A5C3M218	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.946