STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3LYM6tRNA ligase. (800 aa)    
Predicted Functional Partners:
A0A5C3M3T9
KptA family-domain-containing protein.
   
  
 0.519
A0A5C3MEA1
KptA family-domain-containing protein.
   
  
 0.519
A0A5C3M257
KptA family-domain-containing protein.
      
 0.485
A0A5C3M4W8
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.485
A0A5C3MC07
tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...]
      
 0.483
A0A5C3M936
tRNA-splicing endonuclease subunit sen54 N-term-domain-containing protein.
      
 0.481
A0A5C3LRS6
tRNA intron endonuclease.
      
 0.475
A0A5C3LVC1
Histone-fold-containing protein.
 
      0.432
A0A5C3M246
P-loop containing nucleoside triphosphate hydrolase protein.
      
 0.416
A0A5C3MFJ9
Phenylalanyl-tRNA synthetase subunit beta.
      
 0.416
Your Current Organism:
Crucibulum laeve
NCBI taxonomy Id: 68775
Other names: C. laeve
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