STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3MC31Rab-protein geranylgeranyltransferase. (336 aa)    
Predicted Functional Partners:
A0A5C3LZP4
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.999
A0A5C3MFU2
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.855
A0A5C3LIE9
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.846
A0A5C3M7C2
Snare protein YKT6; Belongs to the synaptobrevin family.
    
 
 0.816
A0A5C3LUF6
Alginate lyase-domain-containing protein.
    
 0.814
A0A5C3M8I8
Ras family-domain-containing protein.
    
 0.814
A0A5C3M907
GTP-binding protein RAB5.
    
 0.814
A0A5C3MF83
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.814
A0A5C3MAQ6
Ras family-domain-containing protein.
    
 0.766
A0A5C3MDE3
GDP dissociation inhibitor-domain-containing protein.
    
 0.744
Your Current Organism:
Crucibulum laeve
NCBI taxonomy Id: 68775
Other names: C. laeve
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