A0A5C3MSP9 protein (Crucibulum laeve) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3MSP9

Uncharacterized protein. (1032 aa)

Predicted Functional Partners:

A0A5C3LE22

0.811

A0A5C3LID3

0.811

A0A5C3LQ44

0.811

A0A5C3LSL7

0.811

A0A5C3M8U8

0.811

A0A5C3MJG3

0.811

A0A5C3LMQ0

0.809

A0A5C3MIR3

0.809

A0A5C3MCQ3

0.791

A0A5C3ME52

0.771

Your Current Organism:

Crucibulum laeve

NCBI taxonomy Id: 68775
Other names: C. laeve

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3LE22	A0A5C3MCQ3	Uncharacterized protein.	SKIP/SNW domain-containing protein.	0.581
A0A5C3LE22	A0A5C3MSP9	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A5C3LID3	A0A5C3MCQ3	Uncharacterized protein.	SKIP/SNW domain-containing protein.	0.581
A0A5C3LID3	A0A5C3MSP9	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A5C3LMQ0	A0A5C3MCQ3	Uncharacterized protein.	SKIP/SNW domain-containing protein.	0.802
A0A5C3LMQ0	A0A5C3MSP9	Uncharacterized protein.	Uncharacterized protein.	0.809
A0A5C3LQ44	A0A5C3MCQ3	PH domain-containing protein.	SKIP/SNW domain-containing protein.	0.581
A0A5C3LQ44	A0A5C3MSP9	PH domain-containing protein.	Uncharacterized protein.	0.811
A0A5C3LSL7	A0A5C3MCQ3	Uncharacterized protein.	SKIP/SNW domain-containing protein.	0.581
A0A5C3LSL7	A0A5C3MSP9	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A5C3M8U8	A0A5C3MCQ3	Spc7 kinetochore protein-domain-containing protein.	SKIP/SNW domain-containing protein.	0.581
A0A5C3M8U8	A0A5C3MSP9	Spc7 kinetochore protein-domain-containing protein.	Uncharacterized protein.	0.811
A0A5C3MCQ3	A0A5C3LE22	SKIP/SNW domain-containing protein.	Uncharacterized protein.	0.581
A0A5C3MCQ3	A0A5C3LID3	SKIP/SNW domain-containing protein.	Uncharacterized protein.	0.581
A0A5C3MCQ3	A0A5C3LMQ0	SKIP/SNW domain-containing protein.	Uncharacterized protein.	0.802
A0A5C3MCQ3	A0A5C3LQ44	SKIP/SNW domain-containing protein.	PH domain-containing protein.	0.581
A0A5C3MCQ3	A0A5C3LSL7	SKIP/SNW domain-containing protein.	Uncharacterized protein.	0.581
A0A5C3MCQ3	A0A5C3M8U8	SKIP/SNW domain-containing protein.	Spc7 kinetochore protein-domain-containing protein.	0.581
A0A5C3MCQ3	A0A5C3ME52	SKIP/SNW domain-containing protein.	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II.	0.579
A0A5C3MCQ3	A0A5C3MIR3	SKIP/SNW domain-containing protein.	Transcriptional regulator of RNA polII, SAGA, subunit-domain-containing protein.	0.802