STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT13358.1PKD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)    
Predicted Functional Partners:
KRT13356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.943
KRT13360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.934
KRT13355.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.910
KRT13357.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.902
KRT13730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.831
KRT13359.1
PKD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.795
KRT16320.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.701
KRT16317.1
peptide-N-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
KRT14838.1
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.659
KRT16604.1
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.652
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.