STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH22885.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
OCH23013.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.768
OCH21934.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.704
nirD
Nitrite reductase small subunit; Involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.700
OCH20974.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
 
  0.667
OCH22007.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.469
OCH21370.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.450
OCH21829.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.438
OCH20944.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
OCH17188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.