STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebgCbeta-D-galactosidase; In Escherichia coli this is the second beta-galactosidase system; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)    
Predicted Functional Partners:
OCH23003.1
Beta-galactosidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.983
OCH22994.1
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
    
  0.709
OCH20259.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.616
OCH21326.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.616
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
     
 0.515
OCH23005.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
OCH23002.1
Transcriptional regulator EbgR; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.421
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.