STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH23094.1NirV precursor; Derived by automated computational analysis using gene prediction method: Protein Homology. (615 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.713
OCH20549.1
Class II glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.697
OCH22887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.645
OCH22054.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.571
OCH21331.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.535
OCH19615.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.534
OCH22155.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.528
OCH21650.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.527
OCH23118.1
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.525
OCH19504.1
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.522
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.