STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH17878.1Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)    
Predicted Functional Partners:
OCH17879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.825
OCH17877.1
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
OCH17880.1
YHS domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
OCH17881.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
OCH17882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
OCH17883.1
D-alanine--D-alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
OCH17884.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
OCH17876.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
OCH17875.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.583
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.