STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH17736.1Heme lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
OCH17696.1
Cytochrome c nitrite reductase subunit NrfD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.764
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.757
OCH22412.1
Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.708
OCH17737.1
Cytochrome c nitrate reductase biogenesis protein NrfE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.708
OCH23246.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.703
OCH22495.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.703
OCH20567.1
Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
OCH20821.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
nrfA
Nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
   
 0.589
OCH22411.1
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.582
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.