STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH17200.1Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)    
Predicted Functional Partners:
OCH17201.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.993
OCH16995.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.991
OCH16994.1
Phage major capsid protein, P2 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.990
OCH16987.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.984
OCH17121.1
Replication protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.973
OCH16988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.948
OCH21604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.924
OCH16992.1
Virion morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.880
OCH21596.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.761
OCH19467.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.755
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.