STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH17004.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)    
Predicted Functional Partners:
OCH17006.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.959
OCH17008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.957
OCH17003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
OCH17007.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.815
OCH16990.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.806
OCH17002.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
OCH17000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
OCH17001.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.787
OCH17005.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
OCH17009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.508
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.