STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCH17043.1Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)    
Predicted Functional Partners:
OCH17044.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.996
OCH17045.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.977
OCH17046.1
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.705
OCH17839.1
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.698
OCH16918.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.675
OCH22872.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.656
OCH23100.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.656
OCH23162.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.656
OCH23282.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.656
OCH23360.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.656
Your Current Organism:
Aliivibrio logei
NCBI taxonomy Id: 688
Other names: A. logei, ATCC 29985, CCUG 20283, CIP 104991, LMG 21012, LMG:21012, NCIMB 2252, Photobacterium logei, Vibrio logei, strain 584
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.