Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EGN56894.1InterPro IPR022385; KEGG: pmz:HMPREF0659_A7047 rhs repeat-associated core domain protein; SPTR: Putative RHS repeat-associated core domain protein; TIGRFAM: Rhs repeat-associated core; manually curated; IMG reference gene:2503875522; TIGRFAM: RHS repeat-associated core domain; overlaps another CDS with the same product name. (362 aa)    
Predicted Functional Partners:
EGN56892.1
YD repeat protein; InterPro IPR006530; KEGG: pmz:HMPREF0659_A7049 rhs repeat-associated core domain protein; SPTR: RHS repeat-associated core domain protein; TIGRFAM: YD repeat; IMG reference gene:2503875520; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies).
 
     0.921
EGN56896.1
YD repeat protein; InterPro IPR006530:IPR013517; KEGG: pmz:HMPREF0659_A7045 rhs repeat-associated core domain protein; PFAM: FG-GAP; YD repeat; SPTR: RHS repeat-associated core domain protein; TIGRFAM: YD repeat; IMG reference gene:2503875524; PFAM: Insecticide toxin TcdB middle/N-terminal region; RHS Repeat; TIGRFAM: YD repeat (two copies).
     0.903
EGN56903.1
FG-GAP repeat protein; InterPro IPR013517; KEGG: pmz:HMPREF0659_A7045 rhs repeat-associated core domain protein; PFAM: FG-GAP; SPTR: FG-GAP repeat protein; manually curated; partial gene; IMG reference gene:2503875531; PFAM: Insecticide toxin TcdB middle/N-terminal region; Salmonella virulence plasmid 65kDa B protein.
     0.790
EGN56893.1
KEGG: cho:Chro.50155 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503875521.
       0.773
EGN56895.1
KEGG: pmz:HMPREF0659_A7053 rhs repeat-associated core domain protein; SPTR: RHS repeat-associated core domain protein; manually curated; partial gene; IMG reference gene:2503875523; overlaps another CDS with the same product name.
       0.773
Your Current Organism:
Prevotella multisaccharivorax
NCBI taxonomy Id: 688246
Other names: P. multisaccharivorax DSM 17128, Prevotella multisaccharivorax DSM 17128, Prevotella multisaccharivorax JCM 12954, Prevotella multisaccharivorax str. DSM 17128, Prevotella multisaccharivorax strain DSM 17128
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