STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV48214.1LVIVD repeat-containing protein; InterPro IPR013211; KEGG: fbc:FB2170_08654 hypothetical protein; PFAM: LVIVD; SPTR: Putative uncharacterized protein. (411 aa)    
Predicted Functional Partners:
ADV48215.1
KEGG: fbc:FB2170_06915 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain.
       0.620
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.538
ADV49420.1
KEGG: fbc:FB2170_02790 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.496
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.468
ADV48217.1
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078; IPR002197; IPR003593; KEGG: fbc:FB2170_08614 transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain.
       0.441
ADV51358.1
KEGG: fbc:FB2170_11401 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.432
Your Current Organism:
Cellulophaga algicola
NCBI taxonomy Id: 688270
Other names: C. algicola DSM 14237, Cellulophaga algicola DSM 14237, Cellulophaga algicola IC166, Cellulophaga algicola str. DSM 14237, Cellulophaga algicola strain DSM 14237
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