STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC40478.1Predicted transcriptional regulator. (129 aa)    
Predicted Functional Partners:
SKC40473.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.990
SKC60061.1
Predicted transcriptional regulator.
  
  
  0.889
SKC52073.1
Hypothetical protein.
  
  
 0.698
SKC85417.1
Heavy-metal-associated domain-containing protein.
  
  
 0.698
SKC60054.1
TonB family C-terminal domain-containing protein.
  
 
 0.693
SKC86091.1
Hypothetical protein.
  
 
 0.610
SKC75667.1
Hypothetical protein.
     
 0.526
SKC40483.1
Phosphate-selective porin O and P.
 
     0.522
SKC87023.1
WD domain-containing protein, G-beta repeat-containing protein.
    
  0.504
SKC88966.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.490
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.