STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC41389.1PhnB protein. (150 aa)    
Predicted Functional Partners:
SKC81882.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
     0.774
SKC39370.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.726
SKC41381.1
Helix-turn-helix domain-containing protein.
  
    0.533
SKC55231.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.512
SKC83620.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.512
SKC83814.1
Hypothetical protein.
 
 
  0.459
SKC58787.1
Aldo/keto reductase.
   
 
  0.450
rplM
Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.418
rpsI
Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.418
rpsB
Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.411
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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