STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC42616.1HlyD family secretion protein. (395 aa)    
Predicted Functional Partners:
SKC42610.1
ATP-binding cassette, subfamily B.
 
 0.983
SKC47758.1
ATP-binding cassette, subfamily B.
 
 0.917
SKC63270.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
 0.799
SKC42597.1
Bacteriocin-type signal sequence-containing protein.
       0.780
SKC57875.1
ATP-binding cassette, subfamily B, MsbA.
  
 0.718
SKC63256.1
Outer membrane protein TolC.
  
  0.685
SKC85997.1
Outer membrane protein TolC.
  
  0.621
SKC54584.1
ABC-type antimicrobial peptide transport system, permease component.
  
    0.588
SKC83317.1
ABC-type transport system, involved in lipoprotein release, permease component.
  
    0.588
SKC86638.1
FtsX-like permease family protein.
  
    0.588
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.