STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC44657.1Putative auto-transporter adhesin, head GIN domain. (271 aa)    
Predicted Functional Partners:
SKC89326.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.686
SKC44662.1
Uncharacterized protein, YigZ family.
       0.541
SKC44651.1
Putative Mg2+ transporter-C (MgtC) family protein.
       0.506
SKC62597.1
acyl-CoA thioester hydrolase.
  
     0.504
SKC65455.1
WD40-like Beta Propeller Repeat.
  
 
   0.449
SKC79254.1
Tetratricopeptide repeat-containing protein.
  
 
   0.431
SKC44936.1
WD40-like Beta Propeller Repeat.
  
 
   0.420
SKC76711.1
Hypothetical protein.
   
   0.417
SKC49131.1
WD40-like Beta Propeller Repeat.
  
 
   0.416
SKC87009.1
WD40-like Beta Propeller Repeat.
  
 
   0.412
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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