STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC46141.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (405 aa)    
Predicted Functional Partners:
SKC85080.1
Helix-turn-helix domain-containing protein.
 
   
 0.798
SKC46084.1
Hypothetical protein.
 
   
 0.733
SKC85100.1
RteC protein.
  
     0.688
SKC46072.1
CHC2 zinc finger.
 
   
 0.647
SKC78275.1
Prephenate dehydrogenase.
  
    0.589
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.583
SKC74868.1
comF family protein.
   
    0.583
SKC57511.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.570
SKC85180.1
Bacteroides conjugative transposon TraK protein.
  
     0.555
SKC85090.1
Type IV secretory system Conjugative DNA transfer.
 
   
 0.534
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.