STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC46875.1CubicO group peptidase, beta-lactamase class C family. (357 aa)    
Predicted Functional Partners:
SKC54215.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.772
SKC46848.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.709
SKC46853.1
FecR family protein.
       0.709
SKC46859.1
Outer membrane receptor proteins, mostly Fe transport.
       0.709
SKC46865.1
Protein of unknown function.
       0.709
SKC40357.1
CubicO group peptidase, beta-lactamase class C family.
  
 
  0.672
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.546
SKC46838.1
Hypothetical protein.
       0.486
SKC48721.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
    0.453
SKC74651.1
beta-N-acetylhexosaminidase.
  
 
  0.418
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.