STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC50413.1Repeat domain-containing protein. (1190 aa)    
Predicted Functional Partners:
SKC50865.1
PAP2 superfamily protein.
 
    0.778
SKC55205.1
PAP2 superfamily protein.
 
    0.778
SKC61307.1
PAP2 superfamily protein.
 
    0.778
SKC40635.1
PAP2 superfamily protein.
  
     0.765
SKC57922.1
Signal transduction histidine kinase.
  
 
  0.752
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
  
 
  0.752
SKC40629.1
Hypothetical protein.
  
     0.702
SKC61258.1
Starch-binding associating with outer membrane.
  
 
   0.652
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.610
SKC50423.1
Signal transduction histidine kinase.
 
   0.590
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.