STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC60092.1Hypothetical protein. (292 aa)    
Predicted Functional Partners:
SKC60083.1
Protein of unknown function.
       0.539
SKC60076.1
Repeat domain-containing protein.
       0.513
SKC72839.1
Protein of unknown function.
  
     0.499
SKC60100.1
ABC-type multidrug transport system, ATPase component.
       0.496
SKC71663.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit; Manually curated.
  
     0.445
SKC88469.1
Protein of unknown function.
  
     0.444
SKC59578.1
CRISPR-associated endoribonuclease Cas6.
  
     0.422
SKC77780.1
Protein of unknown function.
  
     0.417
SKC87226.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.401
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.