STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC60100.1ABC-type multidrug transport system, ATPase component. (1029 aa)    
Predicted Functional Partners:
SKC55928.1
ABC-2 family transporter protein.
  
 0.787
SKC45035.1
PAS domain S-box-containing protein.
  
     0.773
SKC45030.1
Hypothetical protein.
  
     0.766
SKC45029.1
Protein of unknown function.
  
     0.759
SKC81409.1
Protein of unknown function.
  
     0.755
SKC72399.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.736
SKC61029.1
PAS domain S-box-containing protein.
  
     0.730
SKC81590.1
ABC-2 type transport system permease protein.
  
 0.707
SKC86358.1
ABC-2 type transport system permease protein.
  
 0.707
SKC61711.1
Protein of unknown function.
  
     0.705
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.