STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC60713.1Tetratricopeptide repeat-containing protein. (1008 aa)    
Predicted Functional Partners:
SKC74331.1
Hypothetical protein.
  
 
 0.971
SKC83217.1
Hypothetical protein.
  
 
 0.971
SKC60720.1
Hypothetical protein.
 
    0.951
SKC59208.1
Outer membrane protein assembly factor BamA.
 
 
 0.921
SKC74996.1
Outer membrane protein OmpA.
 
  
 0.904
SKC60736.1
Protein TonB, links inner and outer membranes.
 
     0.870
SKC41443.1
Outer membrane protein OmpA.
 
  
 0.868
SKC75415.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.867
SKC79254.1
Tetratricopeptide repeat-containing protein.
 
  
 0.864
SKC44936.1
WD40-like Beta Propeller Repeat.
 
  
 0.852
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.