SKC61691.1 protein (Ohtaekwangia koreensis) - STRING interaction network

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SKC61691.1

LytTr DNA-binding domain-containing protein. (310 aa)

Predicted Functional Partners:

SKC63320.1

0.643

SKC64536.1

0.643

SKC63511.1

0.641

SKC63574.1

0.636

SKC42757.1

0.633

SKC64588.1

0.633

SKC87516.1

0.632

SKC45333.1

0.616

SKC83990.1

0.586

SKC57922.1

0.562

Your Current Organism:

Ohtaekwangia koreensis

NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC42757.1	SKC45333.1	SAMN05660236_0417	SAMN05660236_0655	Signal transduction histidine kinase.	Two component regulator propeller.	0.878
SKC42757.1	SKC57922.1	SAMN05660236_0417	SAMN05660236_1744	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SKC42757.1	SKC61691.1	SAMN05660236_0417	SAMN05660236_2061	Signal transduction histidine kinase.	LytTr DNA-binding domain-containing protein.	0.633
SKC42757.1	SKC63320.1	SAMN05660236_0417	SAMN05660236_2212	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.994
SKC42757.1	SKC63511.1	SAMN05660236_0417	SAMN05660236_2225	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC42757.1	SKC63574.1	SAMN05660236_0417	SAMN05660236_2232	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC42757.1	SKC64536.1	SAMN05660236_0417	SAMN05660236_2336	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC42757.1	SKC64588.1	SAMN05660236_0417	SAMN05660236_2342	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC42757.1	SKC83990.1	SAMN05660236_0417	SAMN05660236_4620	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC42757.1	SKC87516.1	SAMN05660236_0417	SAMN05660236_5444	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.993
SKC45333.1	SKC42757.1	SAMN05660236_0655	SAMN05660236_0417	Two component regulator propeller.	Signal transduction histidine kinase.	0.878
SKC45333.1	SKC57922.1	SAMN05660236_0655	SAMN05660236_1744	Two component regulator propeller.	Signal transduction histidine kinase.	0.952
SKC45333.1	SKC61691.1	SAMN05660236_0655	SAMN05660236_2061	Two component regulator propeller.	LytTr DNA-binding domain-containing protein.	0.616
SKC45333.1	SKC63320.1	SAMN05660236_0655	SAMN05660236_2212	Two component regulator propeller.	Signal transduction histidine kinase.	0.882
SKC45333.1	SKC63511.1	SAMN05660236_0655	SAMN05660236_2225	Two component regulator propeller.	Signal transduction histidine kinase.	0.880
SKC45333.1	SKC63574.1	SAMN05660236_0655	SAMN05660236_2232	Two component regulator propeller.	Signal transduction histidine kinase.	0.876
SKC45333.1	SKC64536.1	SAMN05660236_0655	SAMN05660236_2336	Two component regulator propeller.	Signal transduction histidine kinase.	0.878
SKC45333.1	SKC64588.1	SAMN05660236_0655	SAMN05660236_2342	Two component regulator propeller.	Signal transduction histidine kinase.	0.876
SKC45333.1	SKC83990.1	SAMN05660236_0655	SAMN05660236_4620	Two component regulator propeller.	Signal transduction histidine kinase.	0.841
SKC45333.1	SKC87516.1	SAMN05660236_0655	SAMN05660236_5444	Two component regulator propeller.	Signal transduction histidine kinase.	0.878

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

51

average node degree:

9.27

avg. local clustering coefficient:

0.941

expected number of edges:

20

PPI enrichment p-value:

5.21e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044271

Cellular nitrogen compound biosynthetic process

9 of 328

0.9

0.95

1.91e-06

GO:1901566

Organonitrogen compound biosynthetic process

9 of 381

0.83

6.22e-06

GO:0044237

Cellular metabolic process

11 of 1221

0.42

0.36

0.00057

GO:0044238

Primary metabolic process

9 of 1084

0.38

0.28

0.0304

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046933

Proton-transporting ATP synthase activity, rotational mechanism

8 of 9

2.41

6.64

9.66e-15

GO:0046961

Proton-transporting ATPase activity, rotational mechanism

2 of 3

2.28

1.25

0.0046

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045259

Proton-transporting ATP synthase complex

8 of 8

2.46

7.14

1.07e-15

GO:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

5 of 5

2.46

4.49

1.41e-09

GO:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

3 of 3

2.46

2.61

1.16e-05

GO:0005886

Plasma membrane

9 of 467

0.75

0.7

2.11e-05

GO:0005622

Intracellular anatomical structure

11 of 1084

0.47

0.41

9.16e-05

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:32115437

(2020) Transcriptome Analysis of the Ammonia-Oxidizing Bacterium Nitrosomonas mobilis Ms1 Reveals Division of Labor between Aggregates and Free-living Cells.

4 of 11

2.02

2.39

1.14e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:283

ATP synthesis

8 of 8

2.46

6.85

5.66e-15

CL:119

Ribosome, and ATP synthesis

9 of 91

1.46

2.53

3.77e-10

CL:847

Ubiquinol-cytochrome-c reductase activity, and Peptidase M16, C-terminal

2 of 5

2.06

0.98

0.0145

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00190

Oxidative phosphorylation

9 of 68

1.58

3.15

1.10e-11

map01100

Metabolic pathways

10 of 975

0.47

0.37

0.0036

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0045259

Proton-transporting ATP synthase complex

8 of 13

2.25

6.03

3.29e-14

GOCC:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

5 of 9

2.21

3.7

2.17e-08

GOCC:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

3 of 4

2.34

2.27

4.63e-05

GOCC:0016020

Membrane

9 of 549

0.68

0.58

0.00019

GOCC:0005622

Intracellular

9 of 1091

0.38

0.26

0.0464

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0066

ATP synthesis

8 of 8

2.46

7.05

1.80e-15

KW-0375

Hydrogen ion transport

8 of 9

2.41

6.93

1.80e-15

KW-0139

CF(1)

5 of 5

2.46

4.39

2.36e-09

KW-0138

CF(0)

3 of 3

2.46

2.5

1.95e-05

KW-1003

Cell membrane

8 of 136

1.23

1.67

7.84e-08

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF02874

ATP synthase alpha/beta family, beta-barrel domain

2 of 2

2.46

0.83

0.0311

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