STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC63344.1TonB-linked outer membrane protein, SusC/RagA family. (983 aa)    
Predicted Functional Partners:
SKC63357.1
Starch-binding associating with outer membrane.
 
     0.928
SKC88526.1
Starch-binding associating with outer membrane.
  
     0.766
SKC83983.1
Starch-binding associating with outer membrane.
  
     0.764
SKC86059.1
SusD family protein.
  
     0.764
SKC43509.1
Starch-binding associating with outer membrane.
  
     0.763
SKC48063.1
SusD family protein.
  
     0.749
SKC83280.1
SusD family protein.
 
     0.749
SKC81519.1
Starch-binding associating with outer membrane.
 
     0.651
SKC63587.1
Starch-binding associating with outer membrane.
  
     0.640
SKC64666.1
Starch-binding associating with outer membrane.
  
     0.640
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.