STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC64780.1AraC-type DNA-binding protein. (384 aa)    
Predicted Functional Partners:
SKC76914.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.651
SKC57922.1
Signal transduction histidine kinase.
     
 0.648
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
     
 0.648
SKC64790.1
Peptidase family M1.
       0.535
SKC63910.1
AraC-type DNA-binding protein.
  
     0.534
SKC72668.1
Hypothetical protein.
  
     0.484
SKC63675.1
BNR/Asp-box repeat-containing protein.
  
     0.481
SKC83749.1
AraC-type DNA-binding protein.
  
     0.459
SKC64770.1
Cold shock protein (beta-ribbon, CspA family).
       0.426
SKC64760.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
   0.424
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.