STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC74821.1Lipopolysaccharide export system ATP-binding protein. (259 aa)    
Predicted Functional Partners:
SKC40517.1
Lipopolysaccharide export system permease protein.
 
 
 0.998
SKC82126.1
Lipopolysaccharide export system permease protein.
 
 
 0.998
SKC84070.1
ABC-2 type transport system permease protein.
   
  0.935
SKC84072.1
ABC-2 type transport system permease protein.
   
  0.921
SKC42984.1
OstA-like protein.
  
  
 0.916
SKC74824.1
Exonuclease RecJ.
       0.815
SKC86509.1
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.799
SKC74828.1
Hypothetical protein.
       0.773
SKC79290.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.756
SKC44253.1
Biopolymer transport protein ExbB.
 
   
 0.750
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.