STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC76200.1ATP-binding cassette, subfamily B. (590 aa)    
Predicted Functional Partners:
SKC76189.1
ATP-binding cassette, subfamily B.
  
  
 
0.896
SKC66331.1
ATPase family associated with various cellular activities (AAA).
   
 0.869
SKC87513.1
Acyl transferase domain-containing protein.
 
 0.842
SKC82164.1
Tfp pilus assembly protein PilF.
   
  0.836
SKC83696.1
Protein of unknown function.
    
  0.836
SKC86513.1
ABC-type multidrug transport system, ATPase component.
  
 
  0.695
SKC47758.1
ATP-binding cassette, subfamily B.
 
 
 
0.692
SKC57875.1
ATP-binding cassette, subfamily B, MsbA.
 
 
 
0.678
SKC42610.1
ATP-binding cassette, subfamily B.
 
 
 
0.647
SKC59667.1
ATP-binding cassette, subfamily F, member 3.
  
 
  0.644
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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