STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC77099.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (491 aa)    
Predicted Functional Partners:
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.853
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.803
SKC77103.1
Gliding motility-associated lipoprotein GldH.
       0.803
SKC56660.1
C-terminal domain of CHU protein family protein.
  
 
   0.553
SKC77089.1
Hypothetical protein.
       0.526
SKC78280.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
  
     0.510
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.481
SKC38762.1
Por secretion system C-terminal sorting domain-containing protein.
    
   0.480
SKC74940.1
Por secretion system C-terminal sorting domain-containing protein.
    
   0.480
SKC87815.1
Hypothetical protein.
    
   0.480
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.