STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC78740.1ABC-2 type transport system ATP-binding protein. (258 aa)    
Predicted Functional Partners:
SKC84070.1
ABC-2 type transport system permease protein.
 
 
 0.941
SKC84072.1
ABC-2 type transport system permease protein.
 
 
 0.941
SKC78734.1
Hypothetical protein.
 
     0.926
SKC86358.1
ABC-2 type transport system permease protein.
 0.795
SKC54010.1
ABC transporter transmembrane region.
  
 
  0.793
SKC55928.1
ABC-2 family transporter protein.
  
 0.787
SKC81590.1
ABC-2 type transport system permease protein.
 
 0.725
SKC83308.1
ATP-binding cassette, subfamily B, MsbA.
  
 
  0.687
SKC78724.1
ABC-2 family transporter protein.
  
  0.674
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.613
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.