STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC81326.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (233 aa)    
Predicted Functional Partners:
SKC57922.1
Signal transduction histidine kinase.
  
0.994
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
  
 0.994
SKC60669.1
PAS domain S-box-containing protein.
0.994
SKC38601.1
Signal transduction histidine kinase.
 0.993
SKC76225.1
Signal transduction histidine kinase.
 
 0.992
SKC54728.1
PAS domain S-box-containing protein.
0.987
SKC81331.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.963
nuoD-3
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. In the N-terminal section; belongs to the complex I 30 kDa subunit family.
    
   0.960
SKC72018.1
PAS domain-containing protein.
  0.926
SKC58097.1
PAS domain S-box-containing protein.
 
 0.920
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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