STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC81925.1Putative ABC transport system permease protein. (820 aa)    
Predicted Functional Partners:
SKC86781.1
Putative ABC transport system ATP-binding protein.
 
  0.846
SKC86784.1
HlyD family secretion protein.
 
   0.844
SKC53382.1
ABC-type lipoprotein export system, ATPase component.
 
  0.789
SKC48456.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.773
SKC54538.1
PAS domain-containing protein.
  
     0.772
SKC50406.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.769
SKC77457.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.768
SKC86791.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.768
SKC89732.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.505
SKC51209.1
Putative ABC transport system ATP-binding protein.
  
  0.436
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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