STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC85080.1Helix-turn-helix domain-containing protein. (102 aa)    
Predicted Functional Partners:
SKC85100.1
RteC protein.
 
     0.926
SKC76914.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.890
SKC85090.1
Type IV secretory system Conjugative DNA transfer.
 
     0.846
SKC85088.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.826
SKC46084.1
Hypothetical protein.
 
  
 0.811
SKC85232.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
   
 0.806
SKC46141.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
   
 0.798
SKC71790.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.775
SKC85082.1
Hypothetical protein.
       0.773
SKC85086.1
Mobilisation protein (MobC).
       0.773
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.