STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC85178.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SKC85180.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.951
SKC85179.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.948
SKC85182.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.914
SKC85166.1
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.899
SKC85156.1
Protein of unknown function.
 
   
 0.894
SKC85163.1
Protein of unknown function.
 
     0.894
SKC85183.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.797
SKC85177.1
Hypothetical protein.
 
    
0.784
SKC85088.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.775
SKC85090.1
Type IV secretory system Conjugative DNA transfer.
  
     0.773
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.