STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC87153.1Acyl dehydratase. (154 aa)    
Predicted Functional Partners:
SKC66654.1
Catalase.
   
 0.978
SKC76996.1
Hypothetical protein.
  
   0.966
SKC87513.1
Acyl transferase domain-containing protein.
  
 0.951
SKC74956.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.927
SKC57754.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.894
SKC78522.1
Isocitrate dehydrogenase (NADP).
  
 0.893
SKC77909.1
Acetolactate synthase, large subunit.
    
 0.881
SKC41354.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.871
SKC82164.1
Tfp pilus assembly protein PilF.
    
 0.845
SKC45689.1
Trypsin-like peptidase domain-containing protein.
    
  0.842
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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