STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC88681.1ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD. (162 aa)    
Predicted Functional Partners:
SKC57754.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.956
SKC88641.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.929
SKC88653.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 
 0.929
SKC41354.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.928
SKC88644.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 
 0.892
SKC89899.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
 
 0.779
SKC51489.1
phenylacetate-CoA ligase.
 
  
 0.703
SKC88686.1
DinB superfamily protein.
       0.697
SKC40885.1
Phenylacetic acid degradation protein paaN.
  
    0.679
SKC88656.1
Transcriptional regulator, TetR family.
 
     0.672
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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