STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC88769.1Iron complex outermembrane recepter protein. (979 aa)    
Predicted Functional Partners:
SKC87291.1
Starch-binding associating with outer membrane.
  
     0.517
SKC88776.1
ABC-type Fe3+-hydroxamate transport system, substrate-binding protein.
  
    0.517
SKC39250.1
Carboxypeptidase regulatory-like domain-containing protein.
  
    0.508
SKC52639.1
Starch-binding associating with outer membrane.
  
     0.496
SKC88772.1
Hypothetical protein.
       0.481
SKC78510.1
SusD family protein.
  
 
   0.449
SKC86719.1
Hypothetical protein.
  
     0.447
SKC50737.1
Starch-binding associating with outer membrane.
  
     0.430
SKC42736.1
S1/P1 Nuclease.
  
     0.427
SKC50681.1
Iron complex outermembrane recepter protein.
 
 
 
0.416
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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