STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC89221.1AraC-type DNA-binding protein. (308 aa)    
Predicted Functional Partners:
SKC89208.1
Hypothetical protein.
 
     0.681
SKC76914.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.651
SKC57922.1
Signal transduction histidine kinase.
     
 0.648
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
     
 0.648
SKC61198.1
AraC-type DNA-binding protein.
  
     0.640
SKC88638.1
AraC-type DNA-binding protein.
  
     0.627
SKC89224.1
TonB-dependent Receptor Plug Domain.
       0.533
SKC89227.1
Protein of unknown function.
       0.533
SKC86013.1
AraC-type DNA-binding protein.
  
   0.513
SKC72654.1
AraC-type DNA-binding protein.
  
     0.507
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.