Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KXU12660.1 | KXU12661.1 | SINDD18_01449 | SINDD18_01450 | Hypothetical protein. | Phage protein. | 0.952 |
KXU12660.1 | KXU12662.1 | SINDD18_01449 | SINDD18_01451 | Hypothetical protein. | Hypothetical protein. | 0.800 |
KXU12661.1 | KXU12660.1 | SINDD18_01450 | SINDD18_01449 | Phage protein. | Hypothetical protein. | 0.952 |
KXU12661.1 | KXU12662.1 | SINDD18_01450 | SINDD18_01451 | Phage protein. | Hypothetical protein. | 0.800 |
KXU12662.1 | KXU12660.1 | SINDD18_01451 | SINDD18_01449 | Hypothetical protein. | Hypothetical protein. | 0.800 |
KXU12662.1 | KXU12661.1 | SINDD18_01451 | SINDD18_01450 | Hypothetical protein. | Phage protein. | 0.800 |
KXU12662.1 | purA | SINDD18_01451 | SINDD18_01542 | Hypothetical protein. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.438 |
KXU12662.1 | purB | SINDD18_01451 | SINDD18_01501 | Hypothetical protein. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.551 |
KXU12662.1 | pyk | SINDD18_01451 | SINDD18_00850 | Hypothetical protein. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.613 |
KXU12662.1 | rplC | SINDD18_01451 | SINDD18_01766 | Hypothetical protein. | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.413 |
purA | KXU12662.1 | SINDD18_01542 | SINDD18_01451 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | Hypothetical protein. | 0.438 |
purA | purB | SINDD18_01542 | SINDD18_01501 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.985 |
purA | rplC | SINDD18_01542 | SINDD18_01766 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.740 |
purB | KXU12662.1 | SINDD18_01501 | SINDD18_01451 | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | Hypothetical protein. | 0.551 |
purB | purA | SINDD18_01501 | SINDD18_01542 | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.985 |
pyk | KXU12662.1 | SINDD18_00850 | SINDD18_01451 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Hypothetical protein. | 0.613 |
pyk | rplC | SINDD18_00850 | SINDD18_01766 | Pyruvate kinase; Belongs to the pyruvate kinase family. | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.995 |
rplC | KXU12662.1 | SINDD18_01766 | SINDD18_01451 | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Hypothetical protein. | 0.413 |
rplC | purA | SINDD18_01766 | SINDD18_01542 | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.740 |
rplC | pyk | SINDD18_01766 | SINDD18_00850 | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.995 |