Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJG17840.1 | AJG17841.1 | RR42_m0427 | RR42_m0428 | Ribosome hibernation protein YhbH. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.830 |
| AJG17841.1 | AJG17840.1 | RR42_m0428 | RR42_m0427 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosome hibernation protein YhbH. | 0.830 |
| AJG17841.1 | AJG19290.1 | RR42_m0428 | RR42_m1895 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional activator of acetoin dehydrogenase operon AcoR. | 0.816 |
| AJG17841.1 | AJG19958.1 | RR42_m0428 | RR42_m2572 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sigma-54 dependent DNA-binding response regulator. | 0.821 |
| AJG17841.1 | AJG21002.1 | RR42_m0428 | RR42_m3636 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Type IV fimbriae expression regulatory protein PilR. | 0.958 |
| AJG17841.1 | AJG21003.1 | RR42_m0428 | RR42_m3637 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component sensor PilS. | 0.931 |
| AJG17841.1 | AJG23282.1 | RR42_m0428 | RR42_s1694 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sigma-54 dependent transcriptional activator. | 0.816 |
| AJG17841.1 | ntrC | RR42_m0428 | RR42_m2629 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.865 |
| AJG17841.1 | rpoA | RR42_m0428 | RR42_m3884 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.867 |
| AJG17841.1 | rpoB | RR42_m0428 | RR42_m3925 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.819 |
| AJG17841.1 | rpoC | RR42_m0428 | RR42_m3924 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.839 |
| AJG19290.1 | AJG17841.1 | RR42_m1895 | RR42_m0428 | Transcriptional activator of acetoin dehydrogenase operon AcoR. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.816 |
| AJG19958.1 | AJG17841.1 | RR42_m2572 | RR42_m0428 | Sigma-54 dependent DNA-binding response regulator. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.821 |
| AJG21002.1 | AJG17841.1 | RR42_m3636 | RR42_m0428 | Type IV fimbriae expression regulatory protein PilR. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.958 |
| AJG21002.1 | AJG21003.1 | RR42_m3636 | RR42_m3637 | Type IV fimbriae expression regulatory protein PilR. | Two-component sensor PilS. | 0.981 |
| AJG21003.1 | AJG17841.1 | RR42_m3637 | RR42_m0428 | Two-component sensor PilS. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.931 |
| AJG21003.1 | AJG21002.1 | RR42_m3637 | RR42_m3636 | Two-component sensor PilS. | Type IV fimbriae expression regulatory protein PilR. | 0.981 |
| AJG23282.1 | AJG17841.1 | RR42_s1694 | RR42_m0428 | Sigma-54 dependent transcriptional activator. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.816 |
| ntrC | AJG17841.1 | RR42_m2629 | RR42_m0428 | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.865 |
| rpoA | AJG17841.1 | RR42_m3884 | RR42_m0428 | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.867 |
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