STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJG18346.1DNA uptake protein-related DNA-binding protein. (125 aa)    
Predicted Functional Partners:
AJG21026.1
Type IV fimbrial assembly protein PilC.
  
  
 0.672
AJG21318.1
General secretion pathway protein F.
  
  
 0.672
AJG21025.1
Type IV fimbrial assembly, ATPase PilB.
  
  
 0.659
AJG21317.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.659
AJG21027.1
Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.647
AJG24764.1
Hypothetical protein; FIG00974423.
  
  
 0.647
AJG25003.1
Hypothetical protein.
   
  
 0.640
AJG24171.1
Sensory box/GGDEF family protein.
  
  
 0.627
AJG18670.1
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.625
AJG20271.1
SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.
 
    0.608
Your Current Organism:
Cupriavidus basilensis
NCBI taxonomy Id: 68895
Other names: C. basilensis, CCUG 49340, DSM 11853, LMG 18990, LMG 19474, LMG:18990, LMG:19474, Ralstonia basilensis, Wautersia basilensis, strain RK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.