Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AJG17533.1 | AJG20046.1 | RR42_m0118 | RR42_m2661 | Protein of unknown function DUF484. | Hypothetical protein. | 0.747 |
AJG17533.1 | AJG20935.1 | RR42_m0118 | RR42_m3569 | Protein of unknown function DUF484. | DNA polymerase III delta subunit. | 0.712 |
AJG17533.1 | bamE | RR42_m0118 | RR42_m3573 | Protein of unknown function DUF484. | Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.653 |
AJG17533.1 | ftsB | RR42_m0118 | RR42_m1276 | Protein of unknown function DUF484. | Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.406 |
AJG17533.1 | ftsQ | RR42_m0118 | RR42_m3677 | Protein of unknown function DUF484. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.585 |
AJG17533.1 | lptE | RR42_m0118 | RR42_m3570 | Protein of unknown function DUF484. | LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B); Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. | 0.736 |
AJG17533.1 | secE | RR42_m0118 | RR42_m3931 | Protein of unknown function DUF484. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. | 0.593 |
AJG20046.1 | AJG17533.1 | RR42_m2661 | RR42_m0118 | Hypothetical protein. | Protein of unknown function DUF484. | 0.747 |
AJG20046.1 | AJG20935.1 | RR42_m2661 | RR42_m3569 | Hypothetical protein. | DNA polymerase III delta subunit. | 0.770 |
AJG20046.1 | AJG21177.1 | RR42_m2661 | RR42_m3818 | Hypothetical protein. | ClpXP protease specificity-enhancing factor. | 0.781 |
AJG20046.1 | bamB | RR42_m2661 | RR42_m2660 | Hypothetical protein. | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.929 |
AJG20046.1 | bamE | RR42_m2661 | RR42_m3573 | Hypothetical protein. | Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.739 |
AJG20046.1 | ftsB | RR42_m2661 | RR42_m1276 | Hypothetical protein. | Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.725 |
AJG20046.1 | ftsQ | RR42_m2661 | RR42_m3677 | Hypothetical protein. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.744 |
AJG20046.1 | hisS | RR42_m2661 | RR42_m2662 | Hypothetical protein. | Histidyl-tRNA synthetase. | 0.890 |
AJG20046.1 | lptE | RR42_m2661 | RR42_m3570 | Hypothetical protein. | LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B); Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. | 0.778 |
AJG20046.1 | secE | RR42_m2661 | RR42_m3931 | Hypothetical protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. | 0.773 |
AJG20935.1 | AJG17533.1 | RR42_m3569 | RR42_m0118 | DNA polymerase III delta subunit. | Protein of unknown function DUF484. | 0.712 |
AJG20935.1 | AJG20046.1 | RR42_m3569 | RR42_m2661 | DNA polymerase III delta subunit. | Hypothetical protein. | 0.770 |
AJG20935.1 | AJG21177.1 | RR42_m3569 | RR42_m3818 | DNA polymerase III delta subunit. | ClpXP protease specificity-enhancing factor. | 0.762 |
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