STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO08230.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
yceI
Protein YceI.
       0.538
SBO08229.1
Hypothetical protein; Cytochrome b561 homolog 2.
       0.538
SBO08045.1
Hypothetical protein.
  
     0.534
SBO08233.1
Lipase (class 3).
 
     0.532
SBO08232.1
Hypothetical protein.
       0.506
SBO08231.1
Helix-turn-helix protein.
       0.498
SBO12627.1
EamA-like transporter family protein.
  
     0.449
SBO11339.1
EamA-like transporter family protein.
  
     0.447
ylmA
Putative ABC transporter ATP-binding protein YlmA.
 
     0.440
SBO11493.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.