STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynR_2HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
cynR_5
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.772
catM_2
HTH-type transcriptional regulator CatM; Belongs to the LysR transcriptional regulatory family.
  
     0.772
oxyR_2
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.771
cbl
HTH-type transcriptional regulator cbl; Belongs to the LysR transcriptional regulatory family.
  
     0.771
gcvA_1
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.769
dmlR_5
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
     0.769
dmlR_6
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
     0.769
gcvA_7
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.769
allS_6
HTH-type transcriptional activator AllS; Belongs to the LysR transcriptional regulatory family.
  
     0.769
cynR_4
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.768
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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